Okay, so the same sort of stuff happens. 8 gyms, League, evil team, legends. But. You can take them in any order. Except the League and gyms. But I think you should have the ability to take the path of a normal trainer, battle your way through the gyms and take on the league, or go the righteous hero way, taking down the evil team. You could focus solely on you Pokedex, or run around fighting legends. Just a vague concept, but what do you think?

Sounds weird. In the other games, you have to do all that stuff in the same game. It should stay that way so that people don't need to start over the game to experience the other side of the game. Pokemon games aren't meant to be started over, since they contain so much customizable content.

No, I don't mean start over, I mean all these things are optional, and can be done in any order.